Claude Desktop
Desktop · Freemium · Proprietary
Anthropic's official Claude AI desktop application. Supports MCP servers to extend functionality.
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Research & Data · Developer Tools
biomcp
genomoncology/biomcp
One binary. One grammar. Evidence from the biomedical sources you already trust.
Install
docker run --rm ghcr.io/genomoncology/biomcp --versionClient configuration
{
"mcpServers": {
"biomcp": {
"command": "biomcp",
"args": [
"serve"
]
}
}
}Environment variables
NCBI_API_KEYS2_API_KEYOPENFDA_API_KEYNCI_API_KEYONCOKB_TOKENALPHAGENOME_API_KEYBIOMCP_STUDY_DIR- GitHub stars
- 89
- Author
- @genomoncology
- Category
- Research & Data, Developer Tools
- License
- MIT
- Updated
- Oct 6, 2026
Features
Search the literature: search article fans out across PubTator3 and Europe PMC, deduplicates PMID/PMCID/DOI identifiers, and can add a Semantic Scholar leg when your filters support it.
Pivot without rework: move from a gene, variant, drug, disease, pathway, protein, or article straight into the next built-in view instead of rebuilding filters by hand.
Choose a playbook: biomcp skill list shows shipped worked examples so you can open the matching biomcp skill <slug> workflow.
Analyze studies locally: study commands cover local query, cohort, survival, compare, and co-occurrence workflows with native terminal, SVG, and PNG charts for downloaded cBioPortal-style datasets.
Follow the paper trail: article citations, article references, article recommendations, and article entities turn one known paper into a broader evidence map.
Enrich and batch: use biomcp enrich for top-level g:Profiler enrichment and biomcp batch for up to 10 focused get calls in one command.
Details on this page are taken from the project's README. Open README
Supported clients
Clients mentioned in this server's README:
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