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String Db MCP Server
augmented-nature/string-db-mcp-server
A comprehensive Model Context Protocol (MCP) server for accessing the STRING protein interaction database. This server provides powerful tools for protein network analysis, functional enrichment, and comparative genomics through the STRING API.
Install
Client configuration
{
"mcpServers": {
"string-server": {
"command": "node",
"args": [
"/path/to/string-server/build/index.js"
]
}
}
}- Author
- @augmented-nature
- Category
- Database, Research & Data
- Updated
- Oct 6, 2026
Features
string://network/{protein_ids}: Protein interaction network data for specified proteins
string://enrichment/{protein_ids}: Functional enrichment analysis results for protein sets
string://interactions/{protein_id}: Direct interaction partners for a specific protein
string://homologs/{protein_id}: Homologous proteins across different species
Tools (6)
get_protein_interactions
Get direct interaction partners for a specific protein with confidence scores and evidence types
get_interaction_network
Build and analyze protein interaction networks for multiple proteins
get_functional_enrichment
Perform functional enrichment analysis using GO terms, KEGG pathways, and other annotations
get_protein_annotations
Get detailed protein annotations and functional information
find_homologs
Find homologous proteins across different species for comparative analysis
search_proteins
Search for proteins by name or identifier across multiple species
Details on this page are taken from the project's README. Open README
Supported clients
Clients mentioned in this server's README:
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