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Geneontology MCP Server

augmented-nature/geneontology-mcp-server

A comprehensive Model Context Protocol server for accessing Gene Ontology (GO) data, enabling AI systems to perform ontology-based analysis, gene annotation research, and functional enrichment studies.

View on GitHub

Install

Client configuration

{
  "mcpServers": {
    "go-server": {
      "command": "node",
      "args": [
        "/path/to/go-server/build/index.js"
      ]
    }
  }
}
Author
@augmented-nature
Category
Research & Data, Developer Tools
Updated
Oct 6, 2026

Features

  • Term Search & Lookup: Search GO terms by keyword, name, or definition

  • Ontology Navigation: Explore hierarchical relationships between terms

  • Gene Annotations: Access GO annotations for genes and proteins

  • Validation: Validate GO identifiers and check term existence

  • Statistics: Get comprehensive ontology statistics and metadata

Tools (4)

  • search_go_terms

    Search across Gene Ontology terms by keyword, name, or definition.

  • get_go_term

    Get detailed information for a specific GO term.

  • validate_go_id

    Validate GO identifier format and check if term exists.

  • get_ontology_stats

    Get statistics about GO ontologies (term counts, recent updates).

Details on this page are taken from the project's README. Open README

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