Claude Desktop
Desktop · Freemium · Proprietary
Anthropic's official Claude AI desktop application. Supports MCP servers to extend functionality.
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Health & Wellness · Research & Data
Bioontology MCP Server
augmented-nature/bioontology-mcp-server
A production-ready Model Context Protocol (MCP) server that provides comprehensive access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies.
Install
Client configuration
{
"mcpServers": {
"bioontology": {
"command": "node",
"args": [
"/path/to/bioontology-server/build/index.js"
],
"env": {
"BIOONTOLOGY_API_KEY": "<BIOONTOLOGY_API_KEY>"
}
}
}
}Environment variables
BIOONTOLOGY_API_KEY- Author
- @augmented-nature
- Category
- Health & Wellness, Research & Data
- License
- MIT
- Updated
- Oct 6, 2026
Features
search_terms - Search across ontology terms with advanced filtering options
search_properties - Search ontology properties by labels and IDs
search_ontologies - Find ontologies by name, description, or domain
get_ontology_info - Get detailed information about specific ontologies
annotate_text - Analyze text and identify relevant ontology terms
recommend_ontologies - Get ontology recommendations for text or keywords
batch_annotate - Process multiple texts for annotation efficiently
get_class_info - Get detailed information about ontology classes
Details on this page are taken from the project's README. Open README
Supported clients
Clients mentioned in this server's README:
VS Code GitHub Copilot
Desktop · Freemium · MIT
VS Code integrates MCP with GitHub Copilot through agent mode, allowing direct interaction with MCP-provided tools in your agentic coding workflow. Configure servers in Claude Desktop, workspace, or user settings, with guided MCP installation and secure handling of secrets in input variables to avoid leaking hardcoded keys.
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